How do we know that was is stored in DB and free-up the DB

How is it possible to know which data in the DB took the most size and delete it? My guess is it’s “openrpa_instances” but deleting its records doesn’t reduce current database usage.

Connect to database using mongodb Compass that will help you to understand storage usage

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how are you measuring that ?
when you delete something it goes into the log ( or journal for mongodb ) so if you are looking at the disk, it will not have any effect until you do a backup of the database and run a compact.

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Hey, what is the connection URI for database connection when using Compass to connect to openIAP db?

You can find that in docker file. Database name is always openflow